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Well-characterized chemolithotrophic reactions and their respective energy and growth yields (modi ed from Kelly, D.P. and A.P. Wood. 2006. The chemolithotrophic prokaryotes. In: M.W. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, and E. Stackebrandt (eds) The Prokaryotes, Vol. 2, 3rd edn, pp. 441 456. Springer-Verlag, New York. With kind permission of Springer Science and Business Media.)

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ligand An ion, a molecule, or a molecular group that binds to another chemical entity to form a larger complex lithotroph Physiology Term used in reference to an organism s energy source (electron donor); an organism that uses an inorganic substrate (such as ammonia, hydrogen) as an electron donor in energy metabolism Literally, lithothroph means rock eater lysis To break open a cell lysogeny The condition of a host bacterium that has incorporated a virus into its own genetic material When a virus infects a bacterium it can either destroy its host (lytic cycle) or be incorporated in the host genome in a state of lysogeny metabolism The integration of cellular biochemical reactions; often subdivided into catabolism (generation of energy as ATP) and anabolism (biosynthetic reactions that build and maintain new cells at the expense of ATP) metamorphic Geology.

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2. The parameters q and n imply that c Counti( j, j 1)[1, 1] maxc Count1 r;s ( j, j 1)[r, s]. 3. If KCounti( j, j 1)[a, b] max KCount1( j, j 1)[r, s], then (A, B) (a, b) r;s (1, 1). The inference process just described recovers the value of xi( j, j 1). How do we reconcile the uniqueness of xi( j, j 1) with the asserted nonuniqueness of the solution to Problem no. 3 With the parameters q 0.8 and n 0.8 in Example 6.4, we have d(1,1) max r;s d r;s . When the x and c pin-wheel values are complemented, ~ q ! q 0.2 and n ! n 0.8, so that d(0,0) max r;s d r;s . Note that d(1,1) d(0,0). The correct value of (A, B) will be de ned by (A, B) (a, b) (0, 0). Step 2: Inference of c1(q1[ j ]) It remains to nd the values of c1( j); these are partially obscured by the action of the motor wheels. First, we infer the values of c1(q1[ j]). Columns 1 to 5 in Tables 6.31 to 6.34 list for j 0(1)199 1. The unknown move indicator (MI) with values (M/N) specifying whether or not the c pin-wheels moved; equal to M if m[q[ j ]] 1 and to N if m[q[ j ]] 0;

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Pertaining to, produced by, or exhibiting certain changes which minerals or rocks may have undergone since their original deposition; especially applied to the recrystallization that sedimentary rocks have undergone through the in uence of heat and pressure, after which they are called metamorphic rocks micron ( ) A unit of length equal to one-millionth (10 6) of a meter mineralization Conversion of organic substances to inorganic ones For ex ample, the production of CO2 or NO3 from decaying organic matter mRNA Messenger RNA, the key intermediary in gene expression mRNA serves as template for translation of the genetic code into chains of amino acids that constitute proteins mycelium, mycelia Fungal biomass, a network of hyphae natural attenuation Generally refers to the physical, chemical, or biological processes which, under favorable conditions, lead to the reduction of mass, toxicity, mobility, volume, or concentration of organic and/or inorganic.

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